IL_1VX3_144

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_144 not in the Motif Atlas

Geometric match to IL_8CRE_125

Geometric discrepancy: 0.1776

The information below is about IL_8CRE_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1VX3|1|5|C|4596
1VX3|1|5|U|4597
1VX3|1|5|C|4598
1VX3|1|5|A|4599
1VX3|1|5|G|4600
1VX3|1|5|U|4601
1VX3|1|5|A|4602
1VX3|1|5|C|4603
*
1VX3|1|5|G|4608
1VX3|1|5|G|4609
1VX3|1|5|A|4610
1VX3|1|5|A|4611
1VX3|1|5|C|4612
1VX3|1|5|C|4613
1VX3|1|5|G|4614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains