IL_1VX3_162

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_162 not in the Motif Atlas

Geometric match to IL_5NS3_002

Geometric discrepancy: 0.2608

The information below is about IL_5NS3_002

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.13

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

13

Unit IDs

1VX3|1|7|A|32
1VX3|1|7|U|33
1VX3|1|7|C|34
1VX3|1|7|U|35
1VX3|1|7|C|36
*
1VX3|1|7|G|41
1VX3|1|7|A|42
1VX3|1|7|U|43
1VX3|1|7|C|44
1VX3|1|7|U|45

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA