IL_1VX3_168

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCCCGC*GCGCGGGA

Length

15 nucleotides

Bulged bases

1VX3|1|5|C|126, 1VX3|1|5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|122
1VX3|1|5|C|123
1VX3|1|5|C|124
1VX3|1|5|C|125
1VX3|1|5|C|126
1VX3|1|5|G|127
1VX3|1|5|C|128
*
1VX3|1|5|G|140
1VX3|1|5|C|141
1VX3|1|5|G|142
1VX3|1|5|C|143
1VX3|1|5|G|144
1VX3|1|5|G|145
1VX3|1|5|G|146
1VX3|1|5|A|147

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA