IL_1VX3_169

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGAUUCAACCC*GGGCGCAUUUCCAC

Length

27 nucleotides

Bulged bases

1VX3|1|5|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|462
1VX3|1|5|A|463
1VX3|1|5|G|464
1VX3|1|5|G|465
1VX3|1|5|A|466
1VX3|1|5|U|467
1VX3|1|5|U|468
1VX3|1|5|C|469
1VX3|1|5|A|470
1VX3|1|5|A|471
1VX3|1|5|C|472
1VX3|1|5|C|473
1VX3|1|5|C|474
*
1VX3|1|5|G|680
1VX3|1|5|G|681
1VX3|1|5|G|682
1VX3|1|5|C|683
1VX3|1|5|G|684
1VX3|1|5|C|685
1VX3|1|5|A|686
1VX3|1|5|U|687
1VX3|1|5|U|688
1VX3|1|5|U|689
1VX3|1|5|C|690
1VX3|1|5|C|691
1VX3|1|5|A|692
1VX3|1|5|C|693

Current chains

Chain 5

28S ribosomal RNA

Nearby chains