IL_1VX3_170

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUCCGGCCGUGUCGG*CCCGACCGGCGACCGGC

Length

33 nucleotides

Bulged bases

1VX3|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|482
1VX3|1|5|G|483
1VX3|1|5|U|484
1VX3|1|5|C|485
1VX3|1|5|C|486
1VX3|1|5|G|487
1VX3|1|5|G|488
1VX3|1|5|C|489
1VX3|1|5|C|490
1VX3|1|5|G|491
1VX3|1|5|U|492
1VX3|1|5|G|493
1VX3|1|5|U|494
1VX3|1|5|C|495
1VX3|1|5|G|496
1VX3|1|5|G|497
*
1VX3|1|5|C|656
1VX3|1|5|C|657
1VX3|1|5|C|658
1VX3|1|5|G|659
1VX3|1|5|A|660
1VX3|1|5|C|661
1VX3|1|5|C|662
1VX3|1|5|G|663
1VX3|1|5|G|664
1VX3|1|5|C|665
1VX3|1|5|G|666
1VX3|1|5|A|667
1VX3|1|5|C|668
1VX3|1|5|C|669
1VX3|1|5|G|670
1VX3|1|5|G|671
1VX3|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains