IL_1VX3_172

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGGUGGCUCG*CGAGUGUUACAGC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|745
1VX3|1|5|A|746
1VX3|1|5|A|747
1VX3|1|5|G|748
1VX3|1|5|G|749
1VX3|1|5|U|750
1VX3|1|5|G|751
1VX3|1|5|G|752
1VX3|1|5|C|753
1VX3|1|5|U|754
1VX3|1|5|C|755
1VX3|1|5|G|756
*
1VX3|1|5|C|907
1VX3|1|5|G|908
1VX3|1|5|A|909
1VX3|1|5|G|910
1VX3|1|5|U|911
1VX3|1|5|G|912
1VX3|1|5|U|913
1VX3|1|5|U|914
1VX3|1|5|A|915
1VX3|1|5|C|916
1VX3|1|5|A|917
1VX3|1|5|G|918
1VX3|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains