IL_1VX3_179

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUAGAGGUCUUGG*UCAACCUAUUCU

Length

26 nucleotides

Bulged bases

1VX3|1|5|U|1754, 1VX3|1|5|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|A|1746
1VX3|1|5|U|1747
1VX3|1|5|U|1748
1VX3|1|5|A|1749
1VX3|1|5|G|1750
1VX3|1|5|A|1751
1VX3|1|5|G|1752
1VX3|1|5|G|1753
1VX3|1|5|U|1754
1VX3|1|5|C|1755
1VX3|1|5|U|1756
1VX3|1|5|U|1757
1VX3|1|5|G|1758
1VX3|1|5|G|1759
*
1VX3|1|5|U|1773
1VX3|1|5|C|1774
1VX3|1|5|A|1775
1VX3|1|5|A|1776
1VX3|1|5|C|1777
1VX3|1|5|C|1778
1VX3|1|5|U|1779
1VX3|1|5|A|1780
1VX3|1|5|U|1781
1VX3|1|5|U|1782
1VX3|1|5|C|1783
1VX3|1|5|U|1784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA