IL_1VX3_180

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGCCCGAUGCCG*CGGGC

Length

18 nucleotides

Bulged bases

1VX3|1|5|G|1919, 1VX3|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|1910
1VX3|1|5|C|1911
1VX3|1|5|G|1912
1VX3|1|5|C|1913
1VX3|1|5|C|1914
1VX3|1|5|C|1915
1VX3|1|5|G|1916
1VX3|1|5|A|1917
1VX3|1|5|U|1918
1VX3|1|5|G|1919
1VX3|1|5|C|1920
1VX3|1|5|C|1921
1VX3|1|5|G|1922
*
1VX3|1|5|C|2062
1VX3|1|5|G|2063
1VX3|1|5|G|2064
1VX3|1|5|G|2065
1VX3|1|5|C|2066

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA