IL_1VX3_181

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGG*CAC

Length

36 nucleotides

Bulged bases

1VX3|1|5|A|1983, 1VX3|1|5|A|1991, 1VX3|1|5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|1969
1VX3|1|5|A|1970
1VX3|1|5|C|1971
1VX3|1|5|G|1972
1VX3|1|5|G|1973
1VX3|1|5|U|1974
1VX3|1|5|G|1975
1VX3|1|5|G|1976
1VX3|1|5|C|1977
1VX3|1|5|C|1978
1VX3|1|5|A|1979
1VX3|1|5|U|1980
1VX3|1|5|G|1981
1VX3|1|5|G|1982
1VX3|1|5|A|1983
1VX3|1|5|A|1984
1VX3|1|5|G|1985
1VX3|1|5|U|1986
1VX3|1|5|C|1987
1VX3|1|5|G|1988
1VX3|1|5|G|1989
1VX3|1|5|A|1990
1VX3|1|5|A|1991
1VX3|1|5|U|1992
1VX3|1|5|C|1993
1VX3|1|5|C|1994
1VX3|1|5|G|1995
1VX3|1|5|C|1996
1VX3|1|5|U|1997
1VX3|1|5|A|1998
1VX3|1|5|A|1999
1VX3|1|5|G|2000
1VX3|1|5|G|2001
*
1VX3|1|5|C|2016
1VX3|1|5|A|2017
1VX3|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains