IL_1VX3_182

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

1VX3|1|5|U|2090, 1VX3|1|5|A|2093, 1VX3|1|5|G|2111, 1VX3|1|5|G|2114, 1VX3|1|5|G|2115, 1VX3|1|5|C|2116, 1VX3|1|5|C|2119, 1VX3|1|5|G|2122, 1VX3|1|5|C|2123, 1VX3|1|5|G|2124, 1VX3|1|5|C|2248, 1VX3|1|5|C|2249, 1VX3|1|5|C|2256, 1VX3|1|5|G|2259, 1VX3|1|5|C|2260, 1VX3|1|5|U|2267, 1VX3|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|2087
1VX3|1|5|A|2088
1VX3|1|5|G|2089
1VX3|1|5|U|2090
1VX3|1|5|C|2091
1VX3|1|5|G|2092
1VX3|1|5|A|2093
1VX3|1|5|G|2094
1VX3|1|5|A|2095
1VX3|1|5|G|2096
1VX3|1|5|U|2097
1VX3|1|5|G|2098
1VX3|1|5|G|2099
1VX3|1|5|A|2100
1VX3|1|5|C|2101
1VX3|1|5|G|2102
1VX3|1|5|G|2103
1VX3|1|5|G|2104
1VX3|1|5|A|2105
1VX3|1|5|G|2106
1VX3|1|5|C|2107
1VX3|1|5|G|2108
1VX3|1|5|G|2109
1VX3|1|5|C|2110
1VX3|1|5|G|2111
1VX3|1|5|G|2112
1VX3|1|5|G|2113
1VX3|1|5|G|2114
1VX3|1|5|G|2115
1VX3|1|5|C|2116
1VX3|1|5|G|2117
1VX3|1|5|G|2118
1VX3|1|5|C|2119
1VX3|1|5|G|2120
1VX3|1|5|C|2121
1VX3|1|5|G|2122
1VX3|1|5|C|2123
1VX3|1|5|G|2124
1VX3|1|5|C|2125
1VX3|1|5|G|2126
1VX3|1|5|C|2127
1VX3|1|5|G|2128
*
1VX3|1|5|C|2246
1VX3|1|5|C|2247
1VX3|1|5|C|2248
1VX3|1|5|C|2249
1VX3|1|5|C|2250
1VX3|1|5|G|2251
1VX3|1|5|G|2252
1VX3|1|5|A|2253
1VX3|1|5|G|2254
1VX3|1|5|C|2255
1VX3|1|5|C|2256
1VX3|1|5|C|2257
1VX3|1|5|C|2258
1VX3|1|5|G|2259
1VX3|1|5|C|2260
1VX3|1|5|G|2261
1VX3|1|5|G|2262
1VX3|1|5|A|2263
1VX3|1|5|C|2264
1VX3|1|5|G|2265
1VX3|1|5|C|2266
1VX3|1|5|U|2267
1VX3|1|5|A|2268
1VX3|1|5|C|2269
1VX3|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains