IL_1VX3_184

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CCAUAUCCGCAGCAGGUC

Length

22 nucleotides

Bulged bases

1VX3|1|5|U|2788, 1VX3|1|5|U|2790, 1VX3|1|5|C|2794, 1VX3|1|5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2402
1VX3|1|5|A|2403
1VX3|1|5|A|2404
1VX3|1|5|G|2405
*
1VX3|1|5|C|2785
1VX3|1|5|C|2786
1VX3|1|5|A|2787
1VX3|1|5|U|2788
1VX3|1|5|A|2789
1VX3|1|5|U|2790
1VX3|1|5|C|2791
1VX3|1|5|C|2792
1VX3|1|5|G|2793
1VX3|1|5|C|2794
1VX3|1|5|A|2795
1VX3|1|5|G|2796
1VX3|1|5|C|2797
1VX3|1|5|A|2798
1VX3|1|5|G|2799
1VX3|1|5|G|2800
1VX3|1|5|U|2801
1VX3|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains