IL_1VX3_186

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGAAGCCGGC*GCUGGCCCUUGAAAAUC

Length

28 nucleotides

Bulged bases

1VX3|1|5|C|2604, 1VX3|1|5|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2597
1VX3|1|5|A|2598
1VX3|1|5|G|2599
1VX3|1|5|A|2600
1VX3|1|5|A|2601
1VX3|1|5|G|2602
1VX3|1|5|C|2603
1VX3|1|5|C|2604
1VX3|1|5|G|2605
1VX3|1|5|G|2606
1VX3|1|5|C|2607
*
1VX3|1|5|G|2732
1VX3|1|5|C|2733
1VX3|1|5|U|2734
1VX3|1|5|G|2735
1VX3|1|5|G|2736
1VX3|1|5|C|2737
1VX3|1|5|C|2738
1VX3|1|5|C|2739
1VX3|1|5|U|2740
1VX3|1|5|U|2741
1VX3|1|5|G|2742
1VX3|1|5|A|2743
1VX3|1|5|A|2744
1VX3|1|5|A|2745
1VX3|1|5|A|2746
1VX3|1|5|U|2747
1VX3|1|5|C|2748

Current chains

Chain 5

28S ribosomal RNA

Nearby chains