IL_1VX3_188

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGCGCCCUGGAAUGGG*CCCGAGAGAGGGGCCC

Length

33 nucleotides

Bulged bases

1VX3|1|5|G|2652, 1VX3|1|5|U|2661, 1VX3|1|5|A|2674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2648
1VX3|1|5|G|2649
1VX3|1|5|G|2650
1VX3|1|5|C|2651
1VX3|1|5|G|2652
1VX3|1|5|C|2653
1VX3|1|5|C|2654
1VX3|1|5|C|2655
1VX3|1|5|U|2656
1VX3|1|5|G|2657
1VX3|1|5|G|2658
1VX3|1|5|A|2659
1VX3|1|5|A|2660
1VX3|1|5|U|2661
1VX3|1|5|G|2662
1VX3|1|5|G|2663
1VX3|1|5|G|2664
*
1VX3|1|5|C|2670
1VX3|1|5|C|2671
1VX3|1|5|C|2672
1VX3|1|5|G|2673
1VX3|1|5|A|2674
1VX3|1|5|G|2675
1VX3|1|5|A|2676
1VX3|1|5|G|2677
1VX3|1|5|A|2678
1VX3|1|5|G|2679
1VX3|1|5|G|2680
1VX3|1|5|G|2681
1VX3|1|5|G|2682
1VX3|1|5|C|2683
1VX3|1|5|C|2684
1VX3|1|5|C|2685

Current chains

Chain 5

28S ribosomal RNA

Nearby chains