IL_1VX3_189

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACAAUGUAGGUA*UACCUACUAU

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|A|2832
1VX3|1|5|A|2833
1VX3|1|5|C|2834
1VX3|1|5|A|2835
1VX3|1|5|A|2836
1VX3|1|5|U|2837
1VX3|1|5|G|2838
1VX3|1|5|U|2839
1VX3|1|5|A|2840
1VX3|1|5|G|2841
1VX3|1|5|G|2842
1VX3|1|5|U|2843
1VX3|1|5|A|2844
*
1VX3|1|5|U|3844
1VX3|1|5|A|3845
1VX3|1|5|C|3846
1VX3|1|5|C|3847
1VX3|1|5|U|3848
1VX3|1|5|A|3849
1VX3|1|5|C|3850
1VX3|1|5|U|3851
1VX3|1|5|A|3852
1VX3|1|5|U|3853

Current chains

Chain 5

28S ribosomal RNA

Nearby chains