IL_1VX3_194

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGCUCAG*CGUGGAGCAGAAGGGCAAAAGCUC

Length

32 nucleotides

Bulged bases

1VX3|1|5|A|4280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|4238
1VX3|1|5|A|4239
1VX3|1|5|G|4240
1VX3|1|5|C|4241
1VX3|1|5|U|4242
1VX3|1|5|C|4243
1VX3|1|5|A|4244
1VX3|1|5|G|4245
*
1VX3|1|5|C|4263
1VX3|1|5|G|4264
1VX3|1|5|U|4265
1VX3|1|5|G|4266
1VX3|1|5|G|4267
1VX3|1|5|A|4268
1VX3|1|5|G|4269
1VX3|1|5|C|4270
1VX3|1|5|A|4271
1VX3|1|5|G|4272
1VX3|1|5|A|4273
1VX3|1|5|A|4274
1VX3|1|5|G|4275
1VX3|1|5|G|4276
1VX3|1|5|G|4277
1VX3|1|5|C|4278
1VX3|1|5|A|4279
1VX3|1|5|A|4280
1VX3|1|5|A|4281
1VX3|1|5|A|4282
1VX3|1|5|G|4283
1VX3|1|5|C|4284
1VX3|1|5|U|4285
1VX3|1|5|C|4286

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA