IL_1VX3_197

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGUC*GACAGG

Length

11 nucleotides

Bulged bases

1VX3|1|5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_197 not in the Motif Atlas

Geometric match to IL_8DP3_002

Geometric discrepancy: 0.3545

The information below is about IL_8DP3_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

1VX3|1|5|C|4536
1VX3|1|5|C|4537
1VX3|1|5|G|4538
1VX3|1|5|U|4539
1VX3|1|5|C|4540
*
1VX3|1|5|G|4545
1VX3|1|5|A|4546
1VX3|1|5|C|4547
1VX3|1|5|A|4548
1VX3|1|5|G|4549
1VX3|1|5|G|4550

Current chains

Chain 5

28S ribosomal RNA

Nearby chains