IL_1VX3_198

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCCU*AGGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_198 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3885

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

1VX3|1|5|A|4590
1VX3|1|5|U|4591
1VX3|1|5|C|4592
1VX3|1|5|C|4593
1VX3|1|5|U|4594
*
1VX3|1|5|A|4616
1VX3|1|5|G|4617
1VX3|1|5|G|4618
1VX3|1|5|U|4619
1VX3|1|5|U|4620

Current chains

Chain 5

28S ribosomal RNA

Nearby chains