IL_1VX3_202

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

1VX3|1|5|C|4756, 1VX3|1|5|C|4757, 1VX3|1|5|U|4763, 1VX3|1|5|C|4871, 1VX3|1|5|G|4872, 1VX3|1|5|A|4874, 1VX3|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|4755
1VX3|1|5|C|4756
1VX3|1|5|C|4757
1VX3|1|5|U|4758
1VX3|1|5|C|4759
1VX3|1|5|G|4760
1VX3|1|5|G|4761
1VX3|1|5|A|4762
1VX3|1|5|U|4763
1VX3|1|5|A|4764
1VX3|1|5|G|4765
*
1VX3|1|5|U|4869
1VX3|1|5|G|4870
1VX3|1|5|C|4871
1VX3|1|5|G|4872
1VX3|1|5|G|4873
1VX3|1|5|A|4874
1VX3|1|5|G|4875
1VX3|1|5|U|4876
1VX3|1|5|G|4877
1VX3|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains