IL_1VX3_203

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGGUUUCGUACGUAGCAGAG*CGAUCUAUUGAAAGUCAGCCCUCG

Length

46 nucleotides

Bulged bases

1VX3|1|5|U|5006, 1VX3|1|5|C|5013, 1VX3|1|5|A|5016, 1VX3|1|5|G|5041, 1VX3|1|5|G|5049, 1VX3|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|4996
1VX3|1|5|G|4997
1VX3|1|5|G|4998
1VX3|1|5|G|4999
1VX3|1|5|G|5000
1VX3|1|5|U|5001
1VX3|1|5|U|5002
1VX3|1|5|U|5003
1VX3|1|5|C|5004
1VX3|1|5|G|5005
1VX3|1|5|U|5006
1VX3|1|5|A|5007
1VX3|1|5|C|5008
1VX3|1|5|G|5009
1VX3|1|5|U|5010
1VX3|1|5|A|5011
1VX3|1|5|G|5012
1VX3|1|5|C|5013
1VX3|1|5|A|5014
1VX3|1|5|G|5015
1VX3|1|5|A|5016
1VX3|1|5|G|5017
*
1VX3|1|5|C|5032
1VX3|1|5|G|5033
1VX3|1|5|A|5034
1VX3|1|5|U|5035
1VX3|1|5|C|5036
1VX3|1|5|U|5037
1VX3|1|5|A|5038
1VX3|1|5|U|5039
1VX3|1|5|U|5040
1VX3|1|5|G|5041
1VX3|1|5|A|5042
1VX3|1|5|A|5043
1VX3|1|5|A|5044
1VX3|1|5|G|5045
1VX3|1|5|U|5046
1VX3|1|5|C|5047
1VX3|1|5|A|5048
1VX3|1|5|G|5049
1VX3|1|5|C|5050
1VX3|1|5|C|5051
1VX3|1|5|C|5052
1VX3|1|5|U|5053
1VX3|1|5|C|5054
1VX3|1|5|G|5055

Current chains

Chain 5

28S ribosomal RNA

Nearby chains