IL_1VY4_017

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0917

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

1VY4|1|AA|G|409
1VY4|1|AA|G|410
1VY4|1|AA|A|411
1VY4|1|AA|A|412
1VY4|1|AA|G|413
1VY4|1|AA|A|414
1VY4|1|AA|A|415
1VY4|1|AA|G|416
*
1VY4|1|AA|U|427
1VY4|1|AA|G|428
1VY4|1|AA|U|429
1VY4|1|AA|A|430
1VY4|1|AA|A|431
1VY4|1|AA|A|432
1VY4|1|AA|C|433

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4