3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_067 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.0401
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

1VY4|1|BA|U|239
1VY4|1|BA|G|240
1VY4|1|BA|A|241
1VY4|1|BA|G|242
1VY4|1|BA|U|243
1VY4|1|BA|A|244
1VY4|1|BA|G|245
*
1VY4|1|BA|C|253
1VY4|1|BA|G|254
1VY4|1|BA|A|255
1VY4|1|BA|A|256
1VY4|1|BA|A|257
1VY4|1|BA|G|258

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B8
50S ribosomal protein L35
Chain BP
50S ribosomal protein L15

Coloring options:


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