IL_1VY4_074
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_074 not in the Motif Atlas
- Geometric match to IL_7RQB_015
- Geometric discrepancy: 0.0511
- The information below is about IL_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 270
Unit IDs
1VY4|1|BA|C|564
1VY4|1|BA|C|565
1VY4|1|BA|U|566
*
1VY4|1|BA|A|575
1VY4|1|BA|U|576
1VY4|1|BA|G|577
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BP
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
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