3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GCUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VY4|1|BA|G|875
1VY4|1|BA|C|876
1VY4|1|BA|U|877
1VY4|1|BA|A|878
1VY4|1|BA|G|879
*
1VY4|1|BA|C|898
1VY4|1|BA|A|899
1VY4|1|BA|A|900
1VY4|1|BA|A|901
1VY4|1|BA|C|902

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AW
Transfer RNA; tRNA
Chain BQ
50S ribosomal protein L16
Chain BZ
50S ribosomal protein L25

Coloring options:

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