IL_1VY4_115

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_115 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0621

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1VY4|1|BA|A|1469
1VY4|1|BA|G|1470
1VY4|1|BA|A|1471
1VY4|1|BA|A|1472
1VY4|1|BA|G|1473
*
1VY4|1|BA|U|1518
1VY4|1|BA|G|1519
1VY4|1|BA|G|1520
1VY4|1|BA|U|1523

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains