IL_1VY4_123

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

1VY4|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_123 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1135

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1VY4|1|BA|C|1686
1VY4|1|BA|G|1687
1VY4|1|BA|U|1688
1VY4|1|BA|A|1689
1VY4|1|BA|A|1690
1VY4|1|BA|C|1691
*
1VY4|1|BA|G|1696
1VY4|1|BA|G|1697
1VY4|1|BA|A|1698
1VY4|1|BA|G|1699
1VY4|1|BA|A|1700
1VY4|1|BA|A|1701
1VY4|1|BA|G|1702

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2