IL_1VY4_183

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

1VY4|1|CA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_183 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.099

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

1VY4|1|CA|U|367
1VY4|1|CA|U|368
1VY4|1|CA|C|369
*
1VY4|1|CA|G|392
1VY4|1|CA|A|393

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16