IL_1VY4_208

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

1VY4|1|CA|G|1026, 1VY4|1|CA|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|CA|G|1002
1VY4|1|CA|G|1003
1VY4|1|CA|A|1004
1VY4|1|CA|A|1005
1VY4|1|CA|C|1006
*
1VY4|1|CA|G|1023
1VY4|1|CA|G|1024
1VY4|1|CA|U|1025
1VY4|1|CA|G|1026
1VY4|1|CA|C|1027
1VY4|1|CA|C|1028
1VY4|1|CA|C|1029
1VY4|1|CA|C|1030
1VY4|1|CA|G|1030|||A
1VY4|1|CA|C|1030|||B
1VY4|1|CA|G|1030|||C
1VY4|1|CA|A|1030|||D
1VY4|1|CA|G|1031
1VY4|1|CA|G|1032
1VY4|1|CA|G|1033
1VY4|1|CA|G|1034
1VY4|1|CA|A|1035
1VY4|1|CA|G|1036
1VY4|1|CA|C|1037
1VY4|1|CA|C|1038

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains