IL_1VY4_254

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

1VY4|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_254 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.1968

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

1VY4|1|DA|C|844
1VY4|1|DA|G|845
1VY4|1|DA|C|846
*
1VY4|1|DA|G|931
1VY4|1|DA|G|932
1VY4|1|DA|A|933
1VY4|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30