IL_1VY4_261

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

1VY4|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_261 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.3332

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

1VY4|1|DA|G|880
1VY4|1|DA|G|881
1VY4|1|DA|G|882
*
1VY4|1|DA|C|894
1VY4|1|DA|U|895
1VY4|1|DA|A|896
1VY4|1|DA|C|897

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DZ

50S ribosomal protein L25