IL_1VY4_263

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

1VY4|1|DA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_263 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.1166

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

1VY4|1|DA|C|994
1VY4|1|DA|C|995
1VY4|1|DA|A|996
*
1VY4|1|DA|U|1159
1VY4|1|DA|G|1160

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21