IL_1VY4_271

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

1VY4|1|DA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_271 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1649

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1VY4|1|DA|C|1202
1VY4|1|DA|G|1203
1VY4|1|DA|A|1204
1VY4|1|DA|U|1205
1VY4|1|DA|G|1206
*
1VY4|1|DA|U|1240
1VY4|1|DA|A|1241
1VY4|1|DA|A|1242
1VY4|1|DA|G|1243

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15