IL_1VY4_281

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

1VY4|1|DA|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_281 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.2077

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

1VY4|1|DA|U|1433
1VY4|1|DA|A|1434
1VY4|1|DA|G|1435
*
1VY4|1|DA|C|1557
1VY4|1|DA|A|1558
1VY4|1|DA|G|1559
1VY4|1|DA|G|1560

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains