IL_1VY4_289

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_289 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0585

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1VY4|1|DA|G|1651
1VY4|1|DA|A|1652
1VY4|1|DA|G|1653
1VY4|1|DA|A|1654
1VY4|1|DA|A|1655
1VY4|1|DA|C|1656
*
1VY4|1|DA|G|2004
1VY4|1|DA|A|2005
1VY4|1|DA|C|2006

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DR

50S ribosomal protein L17