IL_1VY4_313

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_313 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.102

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

1VY4|1|DA|C|2350
1VY4|1|DA|G|2351
1VY4|1|DA|A|2352
1VY4|1|DA|G|2353
*
1VY4|1|DA|C|2364
1VY4|1|DA|G|2365
1VY4|1|DA|A|2366
1VY4|1|DA|G|2367

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D8

50S ribosomal protein L35