IL_1VY4_346

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

1VY4|1|BA|C|2164, 1VY4|1|BA|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|BA|G|2124
1VY4|1|BA|G|2125
1VY4|1|BA|A|2126
1VY4|1|BA|G|2127
1VY4|1|BA|C|2128
*
1VY4|1|BA|G|2160
1VY4|1|BA|C|2161
1VY4|1|BA|G|2162
1VY4|1|BA|C|2163
1VY4|1|BA|C|2164
1VY4|1|BA|G|2165
1VY4|1|BA|G|2166
1VY4|1|BA|U|2167
1VY4|1|BA|G|2168
1VY4|1|BA|A|2169
1VY4|1|BA|A|2170
1VY4|1|BA|A|2171
1VY4|1|BA|U|2172
1VY4|1|BA|A|2173
1VY4|1|BA|C|2174

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA