IL_1VY4_352

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGCUAGGG*UACCAAACC

Length

17 nucleotides

Bulged bases

1VY4|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|DA|G|874
1VY4|1|DA|G|875
1VY4|1|DA|C|876
1VY4|1|DA|U|877
1VY4|1|DA|A|878
1VY4|1|DA|G|879
1VY4|1|DA|G|880
1VY4|1|DA|G|881
*
1VY4|1|DA|U|895
1VY4|1|DA|A|896
1VY4|1|DA|C|897
1VY4|1|DA|C|898
1VY4|1|DA|A|899
1VY4|1|DA|A|900
1VY4|1|DA|A|901
1VY4|1|DA|C|902
1VY4|1|DA|C|903

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25