IL_1VY5_017

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0994

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

1VY5|1|AA|G|409
1VY5|1|AA|G|410
1VY5|1|AA|A|411
1VY5|1|AA|A|412
1VY5|1|AA|G|413
1VY5|1|AA|A|414
1VY5|1|AA|A|415
1VY5|1|AA|G|416
*
1VY5|1|AA|U|427
1VY5|1|AA|G|428
1VY5|1|AA|U|429
1VY5|1|AA|A|430
1VY5|1|AA|A|431
1VY5|1|AA|A|432
1VY5|1|AA|C|433

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4