IL_1VY5_054
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY5_054 not in the Motif Atlas
- Geometric match to IL_5VCI_002
- Geometric discrepancy: 0.1328
- The information below is about IL_5VCI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
1VY5|1|AA|G|1405
1VY5|1|AA|U|1406
1VY5|1|AA|C|1407
*
1VY5|1|AA|G|1494
1VY5|1|AA|U|1495
1VY5|1|AA|C|1496
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AM
- 30S ribosomal protein S13
- Chain AV
- mRNA
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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