IL_1VY5_058

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_058 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0992

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|AA|C|1431
1VY5|1|AA|G|1432
1VY5|1|AA|A|1433
1VY5|1|AA|A|1434
1VY5|1|AA|G|1435
*
1VY5|1|AA|C|1466
1VY5|1|AA|G|1467
1VY5|1|AA|A|1468
1VY5|1|AA|G|1469

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S ribosomal protein L19