IL_1VY5_061

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_061 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.0311

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|BA|G|24
1VY5|1|BA|U|25
1VY5|1|BA|G|26
1VY5|1|BA|G|27
1VY5|1|BA|A|28
1VY5|1|BA|U|29
1VY5|1|BA|G|30
*
1VY5|1|BA|C|510
1VY5|1|BA|U|511
1VY5|1|BA|G|512
1VY5|1|BA|A|513
1VY5|1|BA|A|514
1VY5|1|BA|A|515
1VY5|1|BA|C|516

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22