IL_1VY5_067

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_067 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0423

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1VY5|1|BA|U|239
1VY5|1|BA|G|240
1VY5|1|BA|A|241
1VY5|1|BA|G|242
1VY5|1|BA|U|243
1VY5|1|BA|A|244
1VY5|1|BA|G|245
*
1VY5|1|BA|C|253
1VY5|1|BA|G|254
1VY5|1|BA|A|255
1VY5|1|BA|A|256
1VY5|1|BA|A|257
1VY5|1|BA|G|258

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15