IL_1VY5_082

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

1VY5|1|BA|G|776, 1VY5|1|BA|A|788, 1VY5|1|BA|A|789, 1VY5|1|BA|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_082 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0523

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|BA|G|775
1VY5|1|BA|G|776
1VY5|1|BA|A|777
*
1VY5|1|BA|U|787
1VY5|1|BA|A|788
1VY5|1|BA|A|789
1VY5|1|BA|C|790
1VY5|1|BA|C|791

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L22