IL_1VY5_123

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

1VY5|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_123 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1085

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1VY5|1|BA|C|1686
1VY5|1|BA|G|1687
1VY5|1|BA|U|1688
1VY5|1|BA|A|1689
1VY5|1|BA|A|1690
1VY5|1|BA|C|1691
*
1VY5|1|BA|G|1696
1VY5|1|BA|G|1697
1VY5|1|BA|A|1698
1VY5|1|BA|G|1699
1VY5|1|BA|A|1700
1VY5|1|BA|A|1701
1VY5|1|BA|G|1702

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2