IL_1VY5_149
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 1VY5|1|BA|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY5_149 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.0601
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
1VY5|1|BA|A|2459
1VY5|1|BA|U|2460
1VY5|1|BA|C|2461
*
1VY5|1|BA|G|2489
1VY5|1|BA|G|2490
1VY5|1|BA|U|2491
1VY5|1|BA|U|2492
1VY5|1|BA|U|2493
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain BQ
- 50S ribosomal protein L16
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