IL_1VY5_210

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

1VY5|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_210 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1013

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

1VY5|1|CA|U|1052
1VY5|1|CA|G|1053
1VY5|1|CA|C|1054
1VY5|1|CA|A|1055
1VY5|1|CA|U|1056
*
1VY5|1|CA|A|1204
1VY5|1|CA|U|1205
1VY5|1|CA|G|1206

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z

Chain CV

mRNA

Chain CW

Transfer RNA; tRNA