IL_1VY5_216

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_216 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1367

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

1VY5|1|CA|C|1158
1VY5|1|CA|U|1159
1VY5|1|CA|G|1160
1VY5|1|CA|C|1161
*
1VY5|1|CA|G|1175
1VY5|1|CA|A|1176
1VY5|1|CA|G|1177
1VY5|1|CA|G|1178
1VY5|1|CA|A|1179
1VY5|1|CA|A|1180
1VY5|1|CA|G|1181

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CI

30S ribosomal protein S9