IL_1VY5_260

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCUAGG*CCAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_260 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3868

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|DA|G|875
1VY5|1|DA|C|876
1VY5|1|DA|U|877
1VY5|1|DA|A|878
1VY5|1|DA|G|879
1VY5|1|DA|G|880
*
1VY5|1|DA|C|897
1VY5|1|DA|C|898
1VY5|1|DA|A|899
1VY5|1|DA|A|900
1VY5|1|DA|A|901
1VY5|1|DA|C|902

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25