IL_1VY5_345

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_345 not in the Motif Atlas

Homologous match to IL_9DFE_093

Geometric discrepancy: 0.0757

The information below is about IL_9DFE_093

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

1VY5|1|BA|U|2457
1VY5|1|BA|G|2458
1VY5|1|BA|A|2459
*
1VY5|1|BA|U|2493
1VY5|1|BA|G|2494

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16