IL_1VY5_353

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_353 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0669

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1VY5|1|DA|G|1666
1VY5|1|DA|G|1667
1VY5|1|DA|A|1668
1VY5|1|DA|A|1669
1VY5|1|DA|C|1670
1VY5|1|DA|U|1671
1VY5|1|DA|C|1672
1VY5|1|DA|U|1673
1VY5|1|DA|G|1674
*
1VY5|1|DA|C|1990
1VY5|1|DA|U|1991
1VY5|1|DA|G|1992
1VY5|1|DA|U|1993
1VY5|1|DA|C|1994

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L14