IL_1VY6_058
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_058 not in the Motif Atlas
- Homologous match to IL_4LFB_062
- Geometric discrepancy: 0.1137
- The information below is about IL_4LFB_062
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_77691.6
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VY6|1|AA|C|1431
1VY6|1|AA|G|1432
1VY6|1|AA|A|1433
1VY6|1|AA|A|1434
1VY6|1|AA|G|1435
*
1VY6|1|AA|C|1466
1VY6|1|AA|G|1467
1VY6|1|AA|A|1468
1VY6|1|AA|G|1469
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 50S ribosomal protein L19
Coloring options: